Curator Dashboard

Sectional atlas featuring sections of the spinal cord and brain for a neuroanatomy course offered by Temple University. Labels may be turned on and off.

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• SciCrunch
• 16 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE, documented on March 5, 2014. Keyose is a project designed and led by a family physician. We are not IT focused, but health-care focused. Technology is just a tool, not our purpose.

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• SciCrunch
• 16 years ago - by Anonymous

A database of cytogenetic and clinical information on rare chromosomal disorders, including microdeletions and microduplications. The database is meant to be easily accessible for all participants, to improve patient care and collaboration between genetic centers, and collect the results of research and clinical features. The acronym ECARUCA stands for "European Cytogeneticists Association Register of Unbalanced Chromosome Aberrations".

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• SciCrunch
• 16 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 9, 2022. The SAGE Genie website provides highly intuitive, visual displays of human and mouse gene expression, based on a unique analytical process (Boon et al.) that reliably matches SAGE tags, 10 or 17 nucleotides in length, to known genes. Recently, with the construction and incorporation of a reference database of SNP-associated alternative tags into SAGE Genie (Silva et al.), the interpretation of tag to human gene mapping has been enhanced. Human SAGE Genie Tools The SAGE Anatomic Viewer visually displays the relative expression of a given gene in normal and malignant tissues of the human body. In addition, there is access to: o The Digital Northern, which shows the relative expression of the gene in each library. o The Ludwig Transcript (LT) Viewer, which visually represents a particular transcript with up to four possible virtual SAGE tag locations (starting from the 3' end) and locations of internally primed or alternatively polyadenylated transcripts. o Expanded access to brain, hES cells, and breast cell subtypes. * The SAGE Digital Gene Expression Displayer distinguishes significant differences in gene expression profiles between two pools of SAGE libraries. * The SAGE Experimental Viewer provides DGED results for pre-set pairs of libraries, one under control and the other under experimental conditions. * The SAGE Absolute Level Lister lists all SAGE libraries and links to the distribution of transcript expression levels in any given library. * The SAGE Library Finder tool searches for one or more tissue-specific libraries from the SAGE collection. * SAGE Genie Downloads provide files of genes, tags, datasets, mappings, and more. * SAGE Genomics Finder tool searches for genomics info for tags. * DKView tool for viewing Digital Karyotyping data. * DK Microbe tool searches for exact matches of 17 base-pair digital karyotyping tags in bacterial and viral genomes. * SAGE Tag Extraction tool to extract tags from sequence files. Mouse SAGE Genie Tools * The mSAGE Expression Matrix visually displays the relative expression of a given gene through stages of mouse development. In addition, there is access to: o The Digital Northern, which shows the relative expression of the gene in each library. o The Ludwig Transcript (LT) Viewer, which visually represents a particular transcript with up to four possible virtual SAGE tag locations (starting from the 3' end) and locations of internally primed or alternatively polyadenylated transcripts. * The mSAGE Absolute Level Lister lists all mouse SAGE libraries, organized by either tissue (normal or malignant) or developmental stage, and links to the distribution of transcript expression levels in any given library. * The mSAGE Digital Gene Expression Displayer distinguishes significant differences in gene expression profiles between two pools of mouse SAGE libraries. * The mSAGE Experimental Viewer automatically sets up the DGED with mouse libraries, prepared as stand alone experiments, for gene expression comparison. * The mSAGE Library Finder tool searches for one or more tissue-specific mouse libraries from the SAGE collection. * mSAGE Genie Downloads provide files of mouse genes, tags, datasets, mappings, and more. * SAGE Genomics Finder tool searches for genomics info for tags. * SAGE Tag Extraction tool to extract tags from sequence files. Notes: The majority of human libraries are short whereas the majority of mouse libraries are long. Several mouse developmental libraries are prepared by the SAGELite method. SAGELite is an extension of the long Sage protocol that includes a PCR-based amplification stage to allow the use of 10ng to 100ng of total RNA to produce a Sage library. However, it has been observed that a significant bias incurred by this amplification process. SAGE Genie was produced as part of the NCI CGAP SAGE project with collaborators from Johns Hopkins University, the Ludwig Institute for Cancer Research, Sao Paulo Branch, the University of Texas MD Anderson Cancer Center, and the Genome Sciences Center of the BCCRC.

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• SciCrunch
• 16 years ago - by Anonymous

A database of information from the Center for Tobacco Use Prevention and Research. Materials include depositions, trial testimony and opening and closing statements, expert reports, jury instructs, and verdicts. Some transcripts are rough copies and others may be marked as confidential although they no longer retain that status. This resource is in French.

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• SciCrunch
• 13 years ago - by Anonymous

A school for education on community health sciences based out of the University of Nottingham. The school contains the divisions of epidemiology, public health, primary care, psychiatry, rehabilitation and aging. The common thread running through each of these divisions is that they all deal with communities, whether these be the entire populations of a region or country, or particular patient groups such as the mentally ill, people with disabilities, and elderly people.

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• SciCrunch
• 16 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 23,2022. A system of software applications that support patient care at Veterans Health Administration health care facilities. VISTA connects VHA facility workstations and PC's with nationally mandated and locally adapted software known as the Computerized Patient Record System (CPRS). Information is relevant to day-to-day operations for patients' medical and healthcare utilization histories such as data on demographics, episodes of care, medicines, practitioner information, diagnoses and procedures. All patients treated at VA Medical Centers are included in the files.

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• SciCrunch
• 16 years ago - by Anonymous

A lab organization which has bases in Munich, Germany and at Columbia University and focuses its research on protein structure and function using sequence and evolutionary information. They utilize machine learning and statistical methods to analyze genetic material and its gene products. Research goals of the lab involve using protein and DNA sequences along with evolutionary information to predict aspects of the proteins relevant to the advance of biomedical research.

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• SciCrunch
• 16 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 23,2022. IFPMA Clinical Trials Portal is brought to you by IFPMA on behalf of its Member Companies and Associations. IFPMA Clinical Trials Portal ensures: a free and easy-to-use interface for patients and health professionals alike to ongoing clinical trials, clinical trial results and complementary information on related issues; non-promotional and reliable information; industry's commitment to the transparency of clinical trials. * Search by Medical Condition and Drug Name * Language Interfaces (En, Es, Fr, De, Jp) * Glossary and Easy Explanation of Medical Expressions * Geographical Search

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• SciCrunch
• 15 years ago - by Anonymous

Portal that unifies human and model organism genetic variation databases towards increasingly holistic views into Genotype-To-Phenotype (G2P) data, and links this system into other biomedical knowledge sources via genome browser functionality. The project has the following specific objectives: *To analyze the G2P field and thus determine emerging needs and practices *To develop key standards for the G2P database field *To create generic database components, services and integration infrastructures for the G2P database domain *To create search modalities and data presentation solutions for G2P knowledge *To facilitate the process of populating G2P databases *To build a major G2P internet portal *To deploy GEN2PHEN solutions to the community *To address system durability and long-term financing *To undertake a whole-system utility and validation pilot study The GEN2PHEN Consortium members have been selected from a talented pool of European research groups and companies that are interested in the G2P database challenge. Additionally, a few non-EU participants have been included to bring extra capabilities to the initiative. The final constellation is characterized by broad and proven competence, a network of established working relationships, and high-level roles/connections within other significant projects in this domain. There is a listing of Locus-specific databases (LSDBs) where you may search by gene symbol or database name. The wiki contains documents and discussions about Gen2Phen's efforts to produce exchange formats and consistent interfaces for LSDBs. Standardizing access to LSDB data is one of the core aims of Gen2Phen. Improved abilities to query, visualize and federate data can be achieved by having well-defined interfaces and consistent exchange formats. See the Use Cases wiki page for our consideration of what makes these issues important.

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• SciCrunch
• 16 years ago - by Anonymous

A group dedicated to combining a variety of experimental and theoretical approaches to find general principles that explain the structure, behavior and evolution of cells and organisms. The center hosts a variety of fellows and faculty from various backgrounds such as biology, physics, chemistry, mathematics, computer science and engineering.

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• SciCrunch
• 16 years ago - by Anonymous

International collaborative research project and database of annotated mammalian genome. Used to improve estimates of total number of genes and their alternative transcript isoforms in both human and mouse. Consortium to assign functional annotations to full length cDNAs that were collected during Mouse Encyclopedia Project at RIKEN.

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• SciCrunch
• 16 years ago - by Anonymous

Commercial vendor of visualization software, factory automation equipment and electric components.

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• SciCrunch
• 16 years ago - by Anonymous

A commercial vendor for science equipment and life science consumables. This company offers customer support such as: taking/tracking orders, product installation and training, application support, calibration services, and general product maintenance and repair.

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• SciCrunch
• 16 years ago - by Anonymous

A portal documenting a project for the development of novel approaches in phenotyping, mutagenesis and informatics to improve the characterization of mouse models for understanding human molecular physiology and pathology. EUMORPHIA has developed a new robust primary screening platform for determining the phenotype of mice: EMPReSS - European Mouse Phenotyping Resource for Standardised Screens. The project is also focused on training new young scientists by funding them to work in a variety of laboratories to gain a broader swathe of techniques. The project has also identified the need for more trained mouse pathologists. To address this, they are setting up training courses in pathology and working at a European level to establish more training.

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• SciCrunch
• 16 years ago - by Anonymous

A portal for Maitreya Dunham's lab, which works on the genomic analysis of experimental evolution in yeast using microarrays and the chemostat. Research interests of the lab include experimental evolution of genetic networks in yeast, aneuploidy and copy number variation, comparative genomics, technology development and human genetics in yeast.

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• SciCrunch
• 15 years ago - by Anonymous

A database software for managing, analyzing and sharing information across multiple devices and people, both online and offline.

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• SciCrunch
• 16 years ago - by Anonymous

A suite of software tools designed for the rapid drawing of glycan structures and for assisting the process of structure determination from mass spectrometry data.

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• SciCrunch
• 11 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE.Documented on September 23,2022. Software designed to serve as a distributed computational framework to help perform mathematical simulations of muscle contraction. DEngine has a Windows PC, central controller PC and mathematical models that run as console applications on clients.

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• SciCrunch
• 16 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE, documented July 19, 2016. This site is built and maintained by the Madhani Lab, Dept. of Biochemistry and Biophysics at the University of California, San Francisco

• Resource
• SciCrunch
• 16 years ago - by Anonymous