Curator Dashboard

Software ideal for the most basic of sequencing projects, where assembly of multiple sequences is not required.

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• SciCrunch
• 12 years ago - by Anonymous

Resource out of service. Documented on May,6th 2021.Archival database of functional genomics data generated by microarray and highly parallel new generation sequencers. Data are exchanged between ArrayExpress at EBI and DOR in common MAGE-TAB format. Supports MIAME and MINSEQE-compliant data submissions. DOR issues accession numbers, E-DORD-n to experiment and A-DORD-n to array design. DOR exchanges public data with the EBI ArrayExpress in common MAGE-TAB format. Note: At present, DOR does not accept submissions. DDBJ will announce launch of DOR when it is ready. (2013/01/31) The data can be kept private until your paper is published. You can set the hold date for a maximum of 1 year and can change it. Registered records are released according to the Data Release Policy.

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• SciCrunch
• 12 years ago - by Anonymous

A collection of cook-book like manuals for various microarray designs. MAGMA is a collaboration between the Norwegian Microarray Consortium NMC and MolMine AS

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• SciCrunch
• 12 years ago - by Anonymous

A software tool (and method) for estimating the amount of cross-sample contamination in next generation sequencing data.

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• SciCrunch
• 12 years ago - by Anonymous

Tool for identifying coding region variants which disrupt pre-mRNA splicing and the underlying mechanism.

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• SciCrunch
• 12 years ago - by Anonymous

A software that is used for the management of data and to deposit content between different locations. A request from an authenticated user is sent to implement for the "service document", which returns details of the collection that user is allowed to deposit within the repository. At this point, the user can deposit their file into a collection, which can then be accessed at a different location.

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• SciCrunch
• 14 years ago - by Anonymous

Brain Evolution in the News pulls in blogs from a variety of resources on topic.

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• SciCrunch
• 14 years ago - by Anonymous

neurodudes is intended to be an open forum at the intersection of neuroscience and ai. regular readers are encouraged to post appropriate material. make sure to put your name somewhere in the post. The ultimate neurodudes RSS feed combines neuro/ai/cogsci-related RSS feeds from many sources, sometimes filtering along the way so as to minimize offtopic posts.

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• SciCrunch
• 14 years ago - by Anonymous

A modular and extensible web-based data management system that integrates all aspects of a multi-center study, from heterogeneous data acquisition to storage, processing and ultimately dissemination, within a streamlined platform. Through a standard web browser, users are able to perform a wide variety of tasks, such as data entry, 3D image visualization and data querying. LORIS also stores data independently from any image processing pipeline, such that data can be processed by external image analysis software tools. LORIS provides a secure web-based and database-driven infrastructure to automate the flow of clinical data for complex multi-site neuroimaging trials and studies providing researchers with the ability to easily store, link, and access significant quantities of both scalar (clinical, psychological, genomic) and multi-dimensional (imaging) data. LORIS can collect behavioral, neurological, and imaging data, including anatomical and functional 3D/4D MRI models, atlases and maps. LORIS also functions as a project monitoring and auditing platform to oversee data acquisition across multiple study sites. Confidentiality during multi-site data sharing is provided by the Subject Profile Management System, which can perform automatic removal of confidential personal information and multiple real-time quality control checks. Additionally, web interactions with the LORIS portal take place over an encrypted channel via SSL, ensuring data security. Additional features such as Double Data Entry and Statistics and Data Query GUI are included.

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• SciCrunch
• 14 years ago - by Anonymous

A large-scale English terminological database that contains over 2.2.M lexical entries (3.3M semantic relations), terminological variants and rich linguistic information (subcategorization frames) which supports text mining systems. It is primarily intended to support text mining and information retrieval in the biomedical domain. The BioLexicon provides specific information to help determine the relevant facts to be extracted. BioLexicon is available in a relational database format (MySQL dump format) and it adheres to the EAGLES/ISO standards for lexical resources.

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• SciCrunch
• 16 years ago - by Anonymous

An efficient software tool for the local alignment of pyrosequencing reads produced by the GS FLX (454) Genome Analyzer technology against a reference genome sequence. The approach explores the characteristics of the data in re-sequencing applications and uses state of the art BWT-based indexing techniques combined with a flexible seed-based approach, leading to a fast and accurate algorithm which needs very little user parameterization. Although initially developed having this specific technology in mind, this software performs equally well on any other platform that can return its sequencing reads in the FASTA, FASTQ or SFF formats, including Illumina, Ion Torrent and Pacific Biosciences technologies.

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• SciCrunch
• 12 years ago - by Anonymous

Tool for index free mapping of multiple short reads on a genome.

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• SciCrunch
• 12 years ago - by Anonymous

A software which maps di-base reads (SOLiD color space reads) to reference genome assemblies in a fast and memory-efficient manner.

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• SciCrunch
• 12 years ago - by Anonymous

Software tool as parallel and distributed error correction algorithm for high-throughput short reads using CUDA and MPI parallel programming models.

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• SciCrunch
• 12 years ago - by Anonymous

A software module for cleaning 454 pyrosequencing reads using filters such as read duplication, length, complexity, base-pair quality and number of undetermined bases. The software also uses flowgram files of paired-end sequences to validate paired-ends files of another file.

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• SciCrunch
• 12 years ago - by Anonymous

A software tool which generates high-quality methylation maps.

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• SciCrunch
• 12 years ago - by Anonymous

The blog of the Whole Brain Catalog.

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• SciCrunch
• 14 years ago - by Anonymous

A software toolset that can be used for deciphering and managing DNA sequences efficiently using the R statistical programming language.

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• SciCrunch
• 12 years ago - by Anonymous

MUSC's Health News RSS Feeds includes topic of a interest you can subscribe to by copying the corresponding URL into your preferred RSS software. You will automatically receive this feed each time it's published. Topics include: Brain Waves, Diabetes Health, Kids Health, Heart Care, Men's Health, Women's Health, and Community Blog.

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• SciCrunch
• 14 years ago - by Anonymous

If you or someone you love has been diagnosed with dementia caused by Alzheimer's disease, you'll be in good hands at Jefferson. Our neurologists and psychiatrists are dedicated to: Compassionate care for individuals with Alzheimer's disease; Supporting families; Advancing care through research into the epidemiology and treatment of neurodegenerative diseases. We interact with patients very early in the disease progression, when impairment is typically mild; deliver state-of-the-art care; provide information; build care-giving skills; and help caregivers connect with community support and plan for the future. Although there is no cure for Alzheimer's disease, our goal is to provide accurate diagnoses and state-of-the-art treatment. We are also involved in basic science research that is advancing fundamental knowledge of dementia-related disorders and paving the way for new methods of treatment. At Jefferson Hospital for Neuroscience, patients with Alzheimer's disease can participate in clinical trials with promising investigational treatments for the disease. Most of these studies are multicenter, multiyear trials that have already met a number of rigorous standards for safety and efficacy and have shown favorable effects on memory. For many patients and their families, participation not only offers the hope of slowing the disease but also represents a chance to share personal experience and contribute to new scientific knowledge. Patients who agree to participate must be able to assent to the study, and caregivers who support that participation act as surrogate decision-makers and provide informed consent.

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• SciCrunch
• 14 years ago - by Anonymous