Curator Dashboard

A software package for creating, merging, and querying multi-string BWTs.

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• SciCrunch
• 11 years ago - by Anonymous

A Systems Biology Library for R, implementing algorithms for constraint based analyses of metabolic networks (e.g. flux-balance analysis (FBA), minimization of metabolic adjustment (MOMA), regulatory on/off minimization (ROOM), robustness analysis and flux variability analysis). This is an implementation of COBRA toolbox in R language.

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• SciCrunch
• 11 years ago - by Anonymous

Information framework and knowledge base to facilitate research about nervous system regeneration. It includes minimal information standards, an ontology that is linked to other ontologies, and a knowledge base built with a triple store and a relational database.

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• SciCrunch
• 12 years ago - by Anonymous

An R package developed for the large-scale analysis of gene expression signatures. It gives the implementations of the gene expression signature and its distance to each. Gene expression signature is represented as a list of genes whose expression is correlated with a biological state of interest. And its distance is defined using a nonparametric, rank-based pattern-matching strategy based on the Kolmogorov-Smirnov statistic. Gene expression signature and its distance can be used to detect similarities among the signatures of drugs, diseases, and biological states of interest.

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• SciCrunch
• 11 years ago - by Anonymous

Software Python library for reading and writing PacBio data files.

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• SciCrunch
• 11 years ago - by Anonymous

Software for identification of metabolites using high precision mass spectrometry. MS Peaks are used to derive a ranked list of sum formulae, alternatively for a given sum formula the theoretical isotope distribution can be calculated to search in MS peak lists.

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• SciCrunch
• 11 years ago - by Anonymous

Data analysis service that predicts tyrosine sulfation sites in protein sequences.

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• SciCrunch
• 11 years ago - by Anonymous

A web system, which could search and display to current CAGE library information in CAGE Database.

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• SciCrunch
• 16 years ago - by Anonymous

Standalone software Java library for reading microscopy image data files in any format and writing image data using standardized, open formats. It currently reads and converts more than 120 file formats to the OME-TIFF data standard. (Dec. 2013)

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• SciCrunch
• 16 years ago - by Anonymous

Software to plot primary analysis quality control metrics to assess potential SMRTcell loading problems.

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• SciCrunch
• 11 years ago - by Anonymous

The Talairach software (client, applet and daemon) provide a 5 level hierarchy of label names created for the 1988 Talairach atlas. Labels can be accessed using talairach coordinates. It includes three components: * Talairach Client: a Java application for finding individual and batch labels as well as command-line tools for accessing the daemon. * Talairach Applet: a web application for the daemon which includes graphical overlays and nearest gray matter searches. * Talairach Daemon: a high-speed database server for querying and retrieving data about human brain structure over the internet. The Talairach Client reports Talairach labels for user-defined coordinates. Coordinate data can be manually input through the interface or read from a file. Input data files should be tab-, space-, or comma-delimited and arranged in x,y,z order. There are options to search for the single point, search range, or nearest gray matter. The results are shown on the interface or written to a file that can be viewed in a text editor or imported into a spreadsheet. The Talairach Applet provides a web application for the Talairach Daemon. Since it is an applet, it requires Java to run. In addition to providing label data and structural probability maps, the applet also displays graphical overlays of each region and can find nearest gray matter.

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• SciCrunch
• 16 years ago - by Anonymous

The mission of the National Spasmodic Dysphonia Association is to advance medical research into the causes of and treatments for spasmodic dysphonia, promote physician and public awareness of the disorder, and provide support to those affected by spasmodic dysphonia.

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• SciCrunch
• 16 years ago - by Anonymous

Private, non-profit institution dedicated to utilizing knowledge in science, engineering, technology and health to improve government decision making and public policy as well as increase public education and understanding. The council collects, analyzes and shares information and knowledge through activities such as consensus studies, meetings and workshops, and program and research management.

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• SciCrunch
• 16 years ago - by Anonymous

Probabilistic reference system for human brain, including tools to establish this reference system for structural and functional anatomy on both macroscopic (in vivo) and microscopic (post mortem) levels. Project has expanded neuroinformatics tools for data sharing and created Conforming Site System that allows laboratories worldwide to contribute data to evolving atlas. Through implementation of ICBM data sharing policy space, they are fostering data exchange while still providing for scientific credit assignment and subject confidentiality.ICBM atlas collection consists of ICBM Template, tool developed to provide reference that includes both set of coordinates and associated anatomical labels; the ICBM 452 T1 atlas, average of T1-weighted MRIs of normal young adult brains, ICBM probabilistic atlases, and Cytoarchitectonic Atlas. ICBM Subject Database is web-based database infrastructure that simplifies image dataset collection, organization and dissemination. Authorized users may view representations of data and form collections of datasets that can be downloaded or fed directly into Pipeline environment for distributed processing and analysis.

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• SciCrunch
• 16 years ago - by Anonymous

Algorithm for testing significance of clustering in RNA-seq data.

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• SciCrunch
• 11 years ago - by Anonymous

OntoMorph is a tab plugin for Protege-OWL 3 that allows a user to mark-up portions of a Neurolucida neuron morphology with OWL instances. A user loads a Neurolucida morphology file, either from their hard drive or from an arbitrary URL, into an interface that allows them to zoom, rotate, and translate the morphology. The interface allows them to select points on the morphology to indicate points, segments, or subtrees of the morphology they wish to assign to an OWL instance. After this selection has been made, OntoMorph saves the selection to the currently active OWL instance in the ontology that is currently loaded into Protege. No modifications are made to the Neurolucida file itself. As a result, an association is created between that portion of the morphology and the OWL instance, such that selecting the OWL instance allows retrieval of the portion. Upon retrieval, the morphology portion can be highlighted, so the user can keep track of what pieces each instance refer to.

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• SciCrunch
• 16 years ago - by Anonymous

Established in 1985, The ALS Association is the only national non-profit organization fighting Lou Gehrig's Disease on every front. By leading the way in global research, providing assistance for people with ALS through a nationwide network of chapters, coordinating multidisciplinary care through certified clinical care centers, and fostering government partnerships, The Association builds hope and enhances quality of life while aggressively searching for new treatments and a cure. As the preeminent ALS organization, The Association leads the way in research, care services, public education, and public policy giving help and hope to those facing the disease. The Association's nationwide network of chapters provides comprehensive patient services and support to the ALS community. The mission of The ALS Association is to lead the fight to treat and cure ALS through global research and nationwide advocacy, while also empowering people with Lou Gehrig's Disease and their families to live fuller lives by providing them with compassionate care and support. The ALS Association has committed more than $58 million to find effective treatments and a cure for Lou Gehrig's Disease. Our global research effort has helped increase the number of scientists working on ALS, advanced new discoveries and treatments, and has shed light on the complex genetic and environmental factors involved in ALS. Diversity exemplifies The ALS Association's research philosophy. The Association spearheads investigator-initiated projects that originate from the minds of scientists. It also has ALS Association-initiated projects in which research ideas come from a small, blue ribbon committee of scientists who reach out with specific projects for designated scientists in the field. The ALS Association offers multi-year grants to established investigators, as well as one-year starter research awards. The Association is proud to administer The Milton Safenowitz Post-Doctoral Fellowship for ALS Research, which is the only post-doctoral fellowship for ALS research. In addition, The ALS Association's Sheila Essey Award, the premier ALS award, recognizes achievement in research. The ALS Association holds workshops each year that bring together scientists researching ALS and other neurodegenerative diseases to generate new research suggestions and fresh insight. In addition, our TREAT ALS (Transitional Research Advancing Therapy for ALS) initiative combines efficient new drug discovery with priorities set for existing drug candidates to accelerate clinical testing of compounds with promise for the disease. Our Clinical Management Research Program focuses on managing the care of people with ALS in such areas as nutrition, respiration, mobility and psychosocial needs. Since 1998, The Association has funded 21 clinical management research projects representing a total commitment of $750,000. The Association produces a series of manuals and videos as well as a DVD, called Living with ALS, that educate patients about all aspects of the disease.

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• SciCrunch
• 14 years ago - by Anonymous

Video tracking software that tracks and analyzes the behavior, movement, and activity of any animal.

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• SciCrunch
• 12 years ago - by Anonymous

Matlab code for preprocessing gas chromatography mass spectrometry data.

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• SciCrunch
• 11 years ago - by Anonymous

PsychoGenics, a leader in preclinical neurobiology and in the provision of CNS drug discovery solutions, works with pharmaceutical companies and not-for-profit organizations to validate targets and select compounds to advance into clinical trials. PsychoGenics transforms drug discovery by combining expertise in behavioral neurobiology with the power of bioinformatics in conjunction with proprietary, high-throughput behavioral testing platforms that rapidly screen compound libraries for CNS activity.

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• SciCrunch
• 16 years ago - by Anonymous