Curator Dashboard

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 2,2022. It is a repository of interactions found by Entangle and compiled into various tables for use by the RNA community. This data does not have a user interface, but data can be accessed in tables. It contains raw Excel/Access Databases and data processed into useful Figures for people who don't want to wade through the primary data. At present it contains informations from 42 PDBs.

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• SciCrunch
• 16 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE, documented on August 26, 2016. The scope of the project includes molecular information pertaining to oral pathogens, bacterial and viral. The website contains a table of protein-protein interactions for human herpesvirus 1. It is operated for the U.S. Department of Energy's National Nuclear Security Administration.

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• SciCrunch
• 16 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 2, 2022. System to annotate human genes based on gene interactions in model organisms. Data are transferred from amenable species like yeast, fly, and worm through homology, and functional gene annotation is facilitated through framework of large database. Used to perform interolog analysis by projection of model organism interaction data onto homologous human proteins, and thus serves as an accelerator for analysis of uncharacterized human proteins.

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• SciCrunch
• 16 years ago - by Anonymous

A comprehensive database of Protein-Protein and Protein-Small molecules interaction, consisting of more than 320,000 interactions captured from more than 1500 abstracts, approximately 1600 published journals and more than 60,000 references. The strength of NetPro lies in the complete manual curation of literature. It covers several entities other than proteins as interacting partners, like RNA, DNA, processes, etc. with well defined, exhaustive interaction terms. NetPro has received several accolades for the quality and quantity of data it contains. It has become an important resource for target identification, validation and pathway research and has subscribers from all over the globe including 3 of the top 5 pharmas.

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• SciCrunch
• 16 years ago - by Anonymous

Java tool that performs the preprocessing of Expression and SNPs microarray Affymetrix. The software allows the automatic download and the use of the clustering and visualization software as the Mev 4.0. The tool is equipped by a graphical interface (Swing) that allows to the user to: Create the workspace (files .cel, preferred algorithms , output, libraries to use); Run/save analysis and workspace settings (xml); Efficient download of the libraries (http, ftp, MD5); Customize basic and graphical settings (objects serialization and deserialization). Type of SNPs: Mapping 500k or preceding chips, SNP 5.0, SNP 6.0. Available for 32 or 64 bit systems, and for Windows and Linux Systems.

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• SciCrunch
• 12 years ago - by Anonymous

An R package for linking SNPs (Single Nucleotide Polymorphisms) to functional knowledge.

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• SciCrunch
• 12 years ago - by Anonymous

WIREs are unique hybrid publications that emphasize the importance of interdisciplinary collaboration in research and education. Publications include Nanomedicine and Nanobiotechnology and Systems Biology and Medicine with future publications coming soon: Computational Statistics (2009), Climate Change (2010), Cognitive Science (2010), Computational Molecular Science (2011), Data Mining and Knowledge Discovery (2011), Developmental Biology (2011), and RNA (2011). Key points include: *High quality reviews commissioned from expert contributors *uthoritative, encyclopedic coverage of diverse scientific fields *Fully citable, qualifying for abstracting, indexing, and ISI ranking Article types are designed to cater to a variety of end users *Overviews provide a broad and non-technical treatment of important topics suitable for advanced students and for researchers without a strong background in the field. *Advanced Reviews examine key areas of research in a citation-rich format suitable for researchers and advanced students. *Focus Articles present specific real-world issues, examples and implementations. *Opinions provide a forum for thought-leaders to offer a more individual perspective. *Editorial Commentaries provide an opportunity for WIREs Editors to offer their own syntheses of broad areas of research in a less formal and more flexible style. The WIREs publishing model: The WIREs combine the most powerful features of online review journals (high online visibility, immediacy, full abstracting and indexing) with the traditional strengths of the encyclopedic reference model (structure, authority, and comprehensiveness of coverage). A built-in mechanism for updating previously published content further differentiates the WIREs from traditional review journals. With their deliberate focus on high-impact topics at the interfaces of the traditional research fields, together with a strong emphasis on interdisciplinary outreach at the level of the individual article, the WIREs will, we hope, offer a valuable new forum for cross-disciplinary communication in scientific and scholarly research. Register for free online access to the WIREs Interdisciplinary Reviews: Each WIREs title will initially be made available via free online access to institutional subscribers. This will allow institutions to gauge end-user interest prior to making a purchasing decision. Institutions may also request one free print subscription when registering for free online access for a given WIREs Interdisciplinary Reviews. Institutions can opt to receive free online access throughout the year for any or all of the WIREs titles. There is no obligation to subscribe in subsequent years if you opt for free access. Institutions retain online access to content published during the opt-in period, with or without a paid subscription in subsequent years. As a WIREs author *Your review will be published alongside other world-class contributions from leading researchers in the field All WIREs article topics and authors are selected by an internationally renowned Editorial Board, and all content is rigorously peer reviewed by experts. *Your article will have the highest possible visibility and usage All WIREs articles will initially be made available for free to online users. *Your review will attract full scientific and professional credit The WIREs are serial publications that qualify for full Abstracting and Indexing and an Impact Factor/ISI Ranking.

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• SciCrunch
• 16 years ago - by Anonymous

The Global Health Library assembles health data, readable in many languages. The GHL aims to: * point to reliable information collections and systems, in which different users and user groups (ministries of health, policy makers, health workers, information providers, patients and their families, general public) can focus on the knowledge that best meets their health information needs; * act as a facilitator enabling access to information contents produced by numerous key providers - be they commercial companies, government institutions, civil society, not-for-profit organizations, and regional or international bodies; and * strive for universality, with focus on developing countries, and will act as a resource locator for print materials essential to areas that do not have access to electronic content.

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• SciCrunch
• 16 years ago - by Anonymous

Web accessible database of data extracted from scientific literature, focusing on proteins that are drug-targets or candidate drug-targets and for which structural data are present in Protein Data Bank . Website supports query types including searches by chemical structure, substructure and similarity, protein sequence, ligand and protein names, affinity ranges and molecular weight . Data sets generated by BindingDB queries can be downloaded in form of annotated SDfiles for further analysis, or used as basis for virtual screening of compound database uploaded by user. Data are linked to structural data in PDB via PDB IDs and chemical and sequence searches, and to literature in PubMed via PubMed IDs .

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• SciCrunch
• 16 years ago - by Anonymous

Software that provides quality control and quality assessment tools for gated flow cytometry data.

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• SciCrunch
• 11 years ago - by Anonymous

A fast and accurate algorithm for assigning single nucleotide polymorphism (SNP) genotypes to microarray data from the Illumina BeadArray technology.

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• SciCrunch
• 13 years ago - by Anonymous

Software tool that predicts whether a single nucleotide polymorphism (SNP) is a regulatory SNP (rSNP). For a given SNP, and using a statistical framework, it can successfully predict the set of transcription factors (TFs) for which binding is affected. The algorithm provides the statistical power to scan large numbers of SNPs, making it suitable to use to screen all associated SNPs output by a typical genome-wide association studies (GWAS).

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• SciCrunch
• 12 years ago - by Anonymous

Search for carbohydrate containing PDB entries by criteria like species or the compound / classification terms. You can choose predefined, frequent terms from the pull-down-menus or enter your own queries manually.

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• SciCrunch
• 13 years ago - by Anonymous

Service that generates schematic drawings of oligosaccharides which are often used to display glycan structure.

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• SciCrunch
• 13 years ago - by Anonymous

Trans-NIH program encouraging and facilitating the study of the underlying mechanisms controlling blood vessel growth and development. Other aims include: to identify specific targets and to develop therapeutics against pathologic angiogenesis in order to reduce the morbidity due to abnormal blood vessel proliferation in a variety of disease states; to better understand the process of angiogenesis and vascularization to improve states of decreased vascularization; to encourage and facilitate the study of the processes of lymphangiogenesis; and to achieve these goals through a multidisciplinary approach, bringing together investigators with varied backgrounds and varied interests.

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• dkNET
• 13 years ago - by Anonymous

International consortium of six centers assembled to participate in the development and implementation of studies to identify infectious agents, dietary factors, or other environmental agents, including psychosocial factors, that trigger type 1 diabetes in genetically susceptible people. The coordinating centers recruit and enroll subjects, obtaining informed consent from parents prior to or shortly after birth, genetic and other types of samples from neonates and parents, and prospectively following selected neonates throughout childhood or until development of islet autoimmunity or T1DM. The study tracks child diet, illnesses, allergies and other life experiences. A blood sample is taken from children every 3 months for 4 years. After 4 years, children will be seen every 6 months until the age of 15 years. Children are tested for 3 different autoantibodies. The study will compare the life experiences and blood and stool tests of the children who get autoantibodies and diabetes with some of those children who do not get autoantibodies or diabetes. In this way the study hopes to find the triggers of T1DM in children with higher risk genes.

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• dkNET
• 13 years ago - by Anonymous

An antibody supplier that provides a range of human antigens, serum and plasma, and cell culture reagents.

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• SciCrunch
• 13 years ago - by Anonymous

A public research university in Sydney, Australia that offers a wide range of degree programs at the undergraduate and graduate level.

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• SciCrunch
• 15 years ago - submitted by

A software that utilizes a peak detection algorithm to identify RNA-protein binding sites.

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• SciCrunch
• 12 years ago - by Anonymous

A five-campus public university system in Massachusetts. The system includes four universities, a medical school, and a satellite campus.

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• SciCrunch
• 16 years ago - submitted by