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Showing 20 out of 998 Resources on page 42

Illuminate

Python module and utilities to parse the metrics binaries output by Illumina sequencers, and provides usable data in the form of python dictionaries and dataframes. Intended to emulate the output of Illumina SAV, it allows you to print sequencing run metrics to the command line as well as work with the data programmatically.

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  • SciCrunch
  • 12 years ago - by Anonymous

Buss-Perry Aggression Questionnaire

A 29 item aggression assessment where participants rank certain statements along a 5 point continuum from "extremely uncharacteristic of me"to "extremely characteristic of me". The scores are normalized on a scale of 0 to 1, with 1 being the highest level of aggression. The questionnaire returns scores for 4 dimensions of aggression: Physical Aggression, Verbal Aggression, Anger, Hostility.

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  • SciCrunch
  • 12 years ago - by Anonymous

University of Vermont Labs and Facilities; Center of Biomedical Research Excellence (COBRE) in Neuroscience

A university-based lab facility for research in biomedicine and neuroscience. The center was created to expand neuroscience research and training, develop shared core facilities and provide funding for research by neuroscience faculty. There is an emphasis on interdisciplinary neuroscience research and dialogue between basic and clinical neuroscientists.

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  • SciCrunch
  • 13 years ago - by Anonymous

Dissociation Experiences Scale

Assessment scale that is a 28 question self test used to screen patients for dissociative identity disorder (formerly called Multiple Personality Disorder). The 28 questions ask the patient about their experiences and their daily life and how often certain events happen.

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  • SciCrunch
  • 12 years ago - by Anonymous

NIH Toolbox Words-in Noise Test

Assessment test that measures how much difficulty a person might have hearing in a noisy environment. A recorded voice instructs the participant to listen to and then repeat words. The task becomes increasingly difficult as the background noise gets louder. This test was developed to measure a person's ability to recognize single words presented amid varying levels of background noise. Recommended for participants ages 6-85 and takes approximately six minutes to administer.

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  • SciCrunch
  • 12 years ago - by Anonymous

High-Throughput GoMiner

A web program that organizes lists of genes of interest (for example, under- and overexpressed genes from a microarray experiment) for biological interpretation in the context of the Gene Ontology and automates the analysis of multiple microarrays then integrates the results across all of them in exportable output files and visualizations. High-Throughput GoMiner is an enhancement of GoMiner and is implemented with both a command line interface and a web interface. The program can also: efficiently perform automated batch processing of an arbitrary number of microarrays; produce a human- or computer-readable report that rank-orders the multiple microarray results according to the number of significant GO categories; integrate the multiple microarray results by providing organized, global clustered image map visualizations of the relationships of significant GO categories; provide a fast form of false discovery rate multiple comparisons calculation; and provide annotations and visualizations for relating transcription factor binding sites to genes and GO categories.

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  • SciCrunch
  • 14 years ago - by Anonymous

Wavelet Analysis of Image Registration

A software tool for the quantitative analysis of various n-dimensional (n-D) image registration techniques. The series of 'C' subroutines which comprise the WAIR library can be easily incorporated into the user's site specific programs and adapted to their particular needs. Wavelet-space triangle analysis is applicable for studying a family of warps on single or multiple n-D data sets. For each data set the WAIR routine assigns a positive real number to every warp alignment in the family, and the best warp for the given data will be the one with the smallest value. It uses the original data prior to warping and the target of the warp in determining warp ranking in reduced wavelet space. Cluster group classification (CGC) is applicable for analyzing the overall performance of a family of warps of a group of data sets. A single number is assigned to each registration alignment, based on its group-clustering characteristics. Spread group classification (SGC) gives preference to registration techniques that spread apart baseline versus activation functional signal for group data.

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  • SciCrunch
  • 16 years ago - by Anonymous

CMFreg

A sequence of fully automated voxel-wise rigid registration that utilizes stable structures of reference for assessment of craniofacial changes overtime.The major strengths of this method are that registration does not depend on the precision of the 3D surface models and that a stable structure of reference can be used without the simple best fit of all surfaces.

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  • SciCrunch
  • 13 years ago - by Anonymous

Mind Hacks

Mind Hacks: Neuroscience and psychology tricks to find out what's going on inside your brain. Mind Hacks is also a book by Tom Stafford and Matt Webb.

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  • SciCrunch
  • 16 years ago - by Anonymous

Educational Resources in Neuroscience

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 23,2022. A database that lists, reviews, and rates resources for teaching neuroscience at the graduate and undergraduate level.

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  • SciCrunch
  • 15 years ago - by Anonymous

Grinder

An open-source bioinformatic tool to create simulated omic shotgun and amplicon sequence libraries for all main sequencing platforms. The tool is available through multiple interfaces like GUI, CLI and API. It is useful for simulating clinical or environmental microbial communities and complements the use of in vitro mock communities.

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  • SciCrunch
  • 12 years ago - by Anonymous

GemSIM

A software package for generating realistic simulated next-generation genome sequencing reads with quality score values. The software is written in Python with a command-line user interface.

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  • SciCrunch
  • 12 years ago - by Anonymous

NIH Toolbox Picture Vocabulary Test

A measure of receptive vocabulary that is administered in a computerized adaptive format. The respondent is presented with an audio recording of a word and four photographic images on the computer screen and is asked to select the picture that most closely matches the meaning of the word. This test takes approximately 4 minutes to administer and is recommended for ages 3-85.

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  • SciCrunch
  • 12 years ago - by Anonymous

GMATo

A software tool used for simple sequence repeats (SSR) or microsatellite characterization. It also facilitates SSR marker design on a genomic scale, microsatellite mining at any length, and comprehensive statistical analysis for DNA sequences in any genome at any size. Analysis parameters are customizable.

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  • SciCrunch
  • 12 years ago - by Anonymous

Magnolya

A software which enables copy number variation (CNV) detections without using a reference genome. Magnolya directly compares the two next-generation sequences datasets.

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  • SciCrunch
  • 12 years ago - by Anonymous

miRanalyzer

A microRNA detection and analysis tool for next-generation sequencing experiments. The program uses a minimum match length of 17bp starting at the first base of the read. The maximum read length is set to 28bp. Reads with more than 5 matches to the genome are discarded, and if a read matches to more than 5 transcripts or Rfam entries it will be removed.

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  • SciCrunch
  • 12 years ago - by Anonymous

BLASTPLOT

A PERL module that can quickly plot the BLAST results from short sequences (primers, probes, reads) against reference targets. This software generates PNG graphs for all of the reference sequences associated with a BLAST result set.

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  • SciCrunch
  • 12 years ago - by Anonymous

cov-est

Covariance estimation library used in Improved Estimation and Interpretation of Correlations in Neural Circuits.

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  • SciCrunch
  • 12 years ago - by Anonymous

Colin 3T/7T High-resolution Atlas

High-field extension of the Colin27 single-subject atlas with additional high-resolution, quantitative, averaged scans at both 3T and 7T.

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  • SciCrunch
  • 12 years ago - by Anonymous

South African Medical Research Council

Organization which focuses on the promotion of health and increased quality of life for South Africans through research, development and technology. This organization conducts basic laboratory investigations, clinical research and public health studies, and its research focuses around the study of TB, HIV, chronic diseases, alcohol and drug abuse, and women's health.

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  • SciCrunch
  • 13 years ago - submitted by