Publications

Publications

1. Ochsner S et al. The Signaling pathways Project: An Integrated 'Omics Knowledgebase for Mammalian Cellular Signaling Pathways. bioRxiv Preprint. 2018. doi: https://doi.org/10.1101/401729
   
2. Hsu CN, Bandrowski AE, Grethe JS, Martone ME. Assessing Value of Biomedical Digital Repositories. PeerJ Preprints. 2017; 5:e2688v1 https://doi.org/10.7287/peerj.preprints.2688v3
3. McMurry J et al. Identifiers for the 21st Century: How to Design, Provision, and Reuse Persistent Identifiers to Maximize Utility and Impact of Life Science Data. PLOS Biology, 2017 Jun 29; 15(6), e2001414. doi:10.1371/journal.pbio.2001414. eCollection 2017 Jun. PMID: 28662064
4. Lin KW et al. The NIDDK Information Network (dkNET) - A Community Research Data and Resource Discovery Portal. ISN’s Forefronts Symposium on the Metabolome and Microbiome in Kidney Disease, 2016 Sep. 23-25, San Diego, CA.
5. Wilkinson MD et al. The FAIR Guiding Principles for scientific data management and stewardship. Sci. Data. 2016 Mar 15; 3:160018 doi:10.1038/sdata.2016.18. PMID: 26978244
6. Grethe JS, Martone ME. The NIDDK Information Network - a Community Discovery Portal for Researchers: Finding Data, Materials, and Tools Relevant to Your Research. Levine-Riggs Symposium. 2016 Mar. 7, Long Beach, CA and Endocrine Society 98th Annual Meeting and Expo. 2016 Apr. 3, Boston, MA.
7. Ozyurt IB, Grethe JS, Martone ME, Bandrowski AE. Resource Disambiguator for the Web: Extracting Biomedical Resources and Their Citations from the Scientific Literature. PloS ONE. 2016 Jan 5; 11(1): e0146300. doi:10.1371/journal.pone.0146300. eCollection 2016. PMID: 26730820
8. Whetzel PL, Grethe JS, Banks DE, Martone ME. The NIDDK Information Network: A Community Portal for Finding Data, Materials, and Tools for Researchers Studying Diabetes, Digestive, and Kidney Diseases. PLoS ONE. 2015 Sep 22;10(9):e0136206. doi: 10.1371/journal.pone.0136206. eCollection 2015. PMID: 26393351
9. Bandrowski A et al. The Resource Identification Initiative: A cultural shift in publishing. Version 2. F1000Res. 2015 May 29 [revised 2015 Nov 19]; 4(134). doi: 10.12688/f1000research.6555.2. eCollection 2015. PMID: 26594330
10. Ferguson AR, Nielson JL, Cragin MH, Bandrowski AE, Martone ME. Big Data from Small Data: Data-Sharing in the "Long Tail" of Neuroscience. Nat. Neurotic. 2014 Oct 28; do:10.1038/nn.3838. PMID: 25349910.

Software

1. Banks, Davis et al.. (2015). The SciCrunch Portal. Zenodo. 10.5281/zenodo.30627
   
2. Ozyurt IB, Grethe JS, Martone ME, Bandrowski AE. (2015). resource_disambiguator: resource_disambiguator. Zenodo. 10.5281/zenodo.20560
3. Ozyurt IB, Grethe JS, Martone ME, Bandrowski AE. (2015). rdw: RDW. Zenodo. 10.5281/zenodo.20557